- READ – Relationship Estimation from Ancient DNA [Monroy Kuhn et al. PLoS ONE 2018]
- Bayenv2.0 – robust analysis of allele frequencies and environemntal correlations. [Günther & Coop Genetics 2013]
- WiHS – a small (and not very efficient) Python script to calculate the WiHS statistic [Günther & Schmid BMC Research Notes 2011]
- phenosim – simulation of phenotypes for genotypes generated by coalescent simulators. [Günther et al. BMC Bioinformatics 2011]