Tools

• READv2 – Relationship Estimation from Ancient DNA version 2 [Alaçamlı et al 2024]
• Scripts to calculate genotype likelihoods corrected for mapping bias [Günther & Schraiber 2024]
• Scripts to estimate mitochondrial contamination in domestic animals [Günther et al. eLife 2024]
• Scripts to assess reference bias and filter biased reads [Günther & Nettelblad PLoS Genetics 2019]
• READ – Relationship Estimation from Ancient DNA [Monroy Kuhn et al. PLoS ONE 2018]
• Bayenv2.0 – robust analysis of allele frequencies and environmental correlations. [Günther & Coop Genetics 2013]
• WiHS – a small (and not very efficient) Python script to calculate the WiHS statistic [Günther & Schmid BMC Research Notes 2011]
• phenosim – simulation of phenotypes for genotypes generated by coalescent simulators. [Günther et al. BMC Bioinformatics 2011]